PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000659.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 503aa    MW: 55352.2 Da    PI: 7.9902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000659.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-055577123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C++Cgk F r  nL+ H r H
  Itr_sc000659.1_g00002.1 55 YLCEICGKGFQRDQNLQLHRRGH 77
                             56*******************88 PP

2zf-C2H212.70.00037131153123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k++  +s+ k H +t+
  Itr_sc000659.1_g00002.1 131 WKCDKCSKRYAVQSDWKAHSKTC 153
                              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-65477No hitNo description
Gene3DG3DSA:3.30.160.603.2E-55477IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6765577IPR007087Zinc finger, C2H2
SMARTSM003550.0435577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-4119152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.16E-6126151No hitNo description
SMARTSM00355140131151IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MTEEEGISSI CSLAENPIPE SNPPVKKKRN LPGNPDPEAE VIALSPKTLM ATNRYLCEIC  60
GKGFQRDQNL QLHRRGHNLP WKLKQRSSKE VRKRVYVCPE KSCVHHHPSR ALGDLTGIKK  120
HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KTCGTREYRC DCGTIFSRRD SFLTHRAFCD  180
ALAEETARVT AAAVASDMHN AAVLGNISYH FLGTPSLGPV SMPPPASHFS SIFKPSPSSD  240
GEGNTPMRHG GLPPWMGQAQ NSVQTSDSPP VTYTDWDKLI PNKVSENADE ILNSSLPLNN  300
TKEVSVPLLF SSQLQPHQPP STAADMSATA LLQKAAQIGA TAADPSFLGI LGSKPNNNMN  360
LAQDDRRDPP NGTLNHPDLP LQYHESLLNS RLNHSDSPLQ YLIESESEGL ENERILRFYG  420
QDNSGNSNNS SKLFGLYGTT LTSVASRLGS EVDDIPGLCH FQMYPSKRRH IQNEEGAGGG  480
QTRDFLGVGI QSICHPSSLN GWL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517845.21e-166PREDICTED: zinc finger protein MAGPIE
SwissprotQ9ZWA61e-138IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I01e-162A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGVIT_12s0028g03030.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-121C2H2-like zinc finger protein